Background Data-driven type 2 diabetes (T2D) subtypes differ in their risks of dementia and stroke. We examined whether their metabolomic profiles also differed and whether subtype-related metabolic patterns were associated with dementia, stroke, and all-cause mortality. Methods We analyzed NMR-based metabolomic profiles across previously defined T2D subtypes in the UK Biobank. Subtype-related metabolites were summarized using principal component analysis (PCA), and their associations with incident dementia, stroke, and all-cause mortality were examined using Cox models. Attenuation analyses and two-sample Mendelian randomization further assessed subtype-outcome relationships and the potential causal relevance of outcome-associated metabolites. Results Among 7,671 individuals (mean age 59.85 years; 37% female), the first five PCs explained 76.7% of variance in subtype-related metabolites and mainly reflected lipid and lipoprotein signatures. After adjustment for T2D subtype and confounders, the HDL-remodeling PC increased risks of all-cause dementia (HR 1.17, 95% CI 1.08-1.27), VaD (HR 1.18, 95% CI 1.05-1.32), and all-cause mortality (HR 1.16, 95% CI 1.13-1.19). Lower scores on the LDL cholesterol-enriched axis increase risks of all-cause dementia (HR 0.75, 95% CI 0.62-0.91) and mortality (HR 0.76, 95% CI 0.69-0.83). The VLDL/LDL-enriched PC was inversely associated with mortality (HR 0.93, 95% CI 0.88-0.98). No significant stroke results were observed. Adjustment for the PCA-derived metabolomic patterns generally attenuated subtype-outcome associations, MR analyses identified 197 metabolite-outcome associations that remained significant after FDR correction. Conclusions Metabolomic profiling showed that the metabolic signatures differed across data-driven T2D subtypes and highlighted lipid and lipoprotein remodeling as a major metabolic feature associated with dementia, stroke, and all-cause mortality.